flowViz v1.36.2
by MJiang
Visualization for flow cytometry
Provides visualization tools for flow cytometry data.
Functions in flowViz
| Name | Description | |
| prepanel.ecdfplot.flowset | Method implementing Lattice ECDF plots for flow data | |
| gpoints-methods | Adding points within a gate to a plot | |
| contour-methods | Contour plots for flow data | |
| xyplot,flowFrame,missing-method | Methods implementing Lattice xyplots for flow data. | |
| plot | Very basic plotting of flowFrames | |
| addName-methods | Add gate names to a flowViz plot. | |
| flowPlot | Standard Plots for Flow Cytometry Data | |
| gpolygon-methods | Drawing filter regions | |
| densityplot | One-dimensional density/histogram plots for flow data | |
| glpolygon-methods | Drawing filter regions | |
| flowViz-package | Visualization for flow cytometry | |
| timeLinePlot | Plot channel values against time | |
| splom | Method implementing Lattice scatter plot matrices for flow data. | |
| levelplot,formula,flowSet-method | Methods implementing Lattice displays for flow data | |
| flowViz.par.get | Query and set session-wide graphical parameter defaults. | |
| glpoints-methods | Adding points within a gate to a plot | |
| glines-methods | Drawing filter boundaries | |
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Details
| Type | Package |
| License | Artistic-2.0 |
| biocViews | Infrastructure, FlowCytometry, CellBasedAssays, Visualization |
| VignetteBuilder | knitr |
| depends | base (>= 2.7.0) , flowCore , lattice , R (>= 2.7.0) |
| imports | Biobase , graphics , grDevices , grid , hexbin , IDPmisc , KernSmooth , latticeExtra , MASS , methods , RColorBrewer , stats , stats4 , utils |
| suggests | colorspace , flowStats , knitr |
| Contributors | R. Gentleman, F. Hahne, N. Meur, B. Ellis, D. Sarkar, M. Jiang |
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