Usage
## S3 method for class 'flowFrame,missing':
splom(x, data, pscales, time,
exclude.time = TRUE, names = FALSE, ...)
Arguments
x
A formula describing the structure of the plot and the variables to
be used in the display.
data
A flowFrame
object
that serves as the source of data. pscales
This arguments is passed unchanged to the corresponding
methods in lattice, and is listed here only because it provides a different
default. See documentation for the original methods for details.
time
A character string giving the name of the data column recording
time. If not provided, we try to guess from the available parameters.
exclude.time
Logical, specifying whether to exclude the time variable
from a scatter plot matrix. Defaults to TRUE
.
names
Logical specifying wether gate names should be added to the
plot. Currently, this feature is not supported for splom plots.
...
More arguments, usually passed on to the underlying lattice
methods.
Examples
data(GvHD)
tf <- transformList(colnames(GvHD)[3:7], asinh)
dat <- tf %on% GvHD[[3]]
## scatter plot matrix of individual flowFrames
lattice.options(panel.error=NULL)
splom(dat)
splom(dat[,1:3], smooth = FALSE)
## displaying filters
rg <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(300,700),
"FL1-H"=c(2,4), "FL2-A"=c(4,7))
splom(dat, filter=rg)
splom(dat, filter=rectangleGate("FSC-H"=c(400,800)))
splom(dat[,1:4], smooth = FALSE, filter=norm2Filter("FSC-H", "SSC-H", scale=1.5))