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fluoSurv (version 1.0.0)

Estimate Insect Survival from Fluorescence Data

Description

Use spectrophotometry measurements performed on insects as a way to infer pathogens virulence. Insect movements cause fluctuations in fluorescence signal, and functions are provided to estimate when the insect has died as the moment when variance in autofluorescence signal drops to zero. The package provides functions to obtain this estimate together with functions to import spectrophotometry data from a Biotek microplate reader. Details of the method are given in Parthuisot et al. (2018) .

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Version

Install

install.packages('fluoSurv')

Monthly Downloads

154

Version

1.0.0

License

GPL-3

Maintainer

Jean-Baptiste Ferdy

Last Published

April 10th, 2018

Functions in fluoSurv (1.0.0)

galleria

Fluorescence data measured on Galleria mellonella
extract.well

Extract data for a single well
read.kinetic

Reads a kinetic file, as produced by a Biotek plate reader.
setup

An injection experimental setup
fluoSurv

fluoSurv: A package for estimating insect survival data from spectrophotometry measurements
estimate.LT

Estimation of time to death
estimate.offset

Estimate variance in signal
when.threshold

Computes when fluorescence exceeds a given threshold value