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frailtypack (version 2.2-19)

General Frailty models using a semi_parametrical penalized likelihood estimation or a parametrical estimation

Description

Frailtypack now fits several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametrical estimation. 1) A shared gamma frailty model and Cox proportional hazard model. Left truncated, censored data and strata (max=2) are allowed. Clustered and recurrent survival times can be studied (the Andersen-Gill(1982) approach has been implemented for recurrent events). An automatic choice of the smoothing parameter is possible using an approximated cross-validation procedure. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of joint modelling of recurrent events with terminal event.

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Version

Install

install.packages('frailtypack')

Monthly Downloads

2,571

Version

2.2-19

License

GPL (>= 2)

Maintainer

Virginie Rondeau

Last Published

October 24th, 2011

Functions in frailtypack (2.2-19)

frailtyPenal for Nested frailty models

Fit a Nested Frailty model using a semi-parametrical penalized likelihood estimation or a parametrical estimation
plot.nestedPenal

Plot Method for a Nested frailty model.
frailtypack-package

General Frailty models using a semi-parametrical penalized likelihood estimation or a parametrical estimation
print.jointPenal

Print a Short Summary of parameter estimates of a joint frailty model
frailtyPenal for Shared frailty models

Fit a Shared Gamma Frailty model using a semi-parametrical penalized likelihood estimation or parametrical estimation
additivePenal

Fit an Additive Frailty model using a semi-parametrical penalized likelihood estimation or a parametrical estimation
print.frailtyPenal

Print a Short Summary of parameter estimates of a shared gamma frailty model
dataNested

Simulated data with two levels of grouping
plot.additivePenal

Plot Method for an Additive frailty model.
subcluster

Identify subclusters
dataJoint

Simulated data with recurrent events and informative terminal event
readmission

Rehospitalization colorectal cancer
summary.frailtyPenal

summary of parameter estimates of a shared frailty model
summary.additivePenal

summary of parameter estimates of an additive frailty model
plot.frailtyPenal

Plot Method for a Shared frailty model.
slope

Identify variable associated with the random slope
plot.jointPenal

Plot Method for a Joint frailty model.
summary.jointPenal

summary of parameter estimates of a joint frailty model
dataAdditive

Simulated data as a gathering of clinical trials databases
frailtyPenal for Joint frailty models

Fit Joint Frailty model for recurrent and terminal events using semi-parametrical penalized likelihood estimation or a parametrical estimation
print.nestedPenal

Print a Short Summary of parameter estimates of a nested frailty model
summary.nestedPenal

summary of regression coefficient estimates of a nested frailty model
terminal

Identify terminal indicator
print.additivePenal

Print a Short Summary of parameter estimates of an additive frailty model