fsbrain (version 0.0.2)

group.morph.standard: Retrieve standard space morphometry data for a group of subjects.

Description

Load standard space morphometry data (like 'surf/lh.area') for a group of subjects from disk. Uses knowledge about the FreeSurfer directory structure to load the correct file.

Usage

group.morph.standard(subjects_dir, subjects_list, measure, hemi,
  fwhm = "10", template_subject = "fsaverage", format = "mgh")

Arguments

subjects_dir,

string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.

subjects_list,

vector of strings. The subject identifiers.

measure,

string. Name of the vertex-wise measure of morphometry data file. E.g., "area" or "thickness". Used to construct the name of the morphometry file to be loaded.

hemi,

string, one of 'lh', 'rh' or 'both'. The hemisphere name. Used to construct the names of the annotation and morphometry data files to be loaded.

fwhm,

string. Smoothing as string, e.g. '10' or '25'.

template_subject,

string. Template subject name, defaults to 'fsaverage'.

format,

string. One of 'mgh', 'mgz', 'curv'. Defaults to 'mgh'.

Value

named list with standard space morph data, the names are the subject identifiers from the subjects_list, and the values are morphometry data vectors (all with identical length, the data is mapped to a template subject).

See Also

Other morphometry data functions: group.morph.native, subject.morph.native, subject.morph.standard

Examples

# NOT RUN {
   fsbrain::download_optional_data();
   subjects_dir = fsbrain::get_optional_data_filepath("subjects_dir");
   subjects_list = c("subject1", "subject2");
   data = group.morph.standard(subjects_dir, subjects_list, "thickness", "lh", fwhm='10');
# }
# NOT RUN {
# }

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