Clip data at quantiles to remove outliers.
Get a shiny visualization style.
Load annotations for a group of subjects.
Download the FreeSurfer v6 fsaverage subject.
group.concat.measures.native
Concatenate native space data for a group of subjects.
Show one or more views of the given meshes in rgl windows.
Visualize a list of colored meshes from a single viewpoint, interactively.
coloredmesh.from.morph.native
Create a coloredmesh from native space morphometry data.
Visualize a list of colored meshes, rotating the camera around them.
coloredmesh.from.morph.standard
Create a coloredmesh from standard space morphometry data.
get_optional_data_filepath
Access a single file from the package cache by its file name.
Extract a region from an annotation as a label.
Read demographics file
group.multimorph.agg.standard
Aggregate standard space (fsaverage) morphometry data for multiple measures over hemispheres for a group of subjects.
Perform rglactions, like taking screenshots.
Spread the values in the region_value_list and return them for one hemisphere.
group.concat.measures.standard
Concatenate standard space data for a group of subjects.
spread.values.over.subject
Spread the values in the region_value_list and return them for one hemisphere.
Retrieve standard space morphometry data for a group of subjects.
combine.coloredmeshes.data
Combine the data from the coloredmeshes, if any.
coloredmesh.from.morphdata
Create a coloredmesh from arbitrary data.
check.for.coloredmeshes.colormap
Return the colormap function from the meshes, if any.
Retrieve label data for a group of subjects.
mask.from.labeldata.for.hemi
Create a binary mask from labels.
Visualize a list of colored meshes from four angles.
Visualize a list of colored meshes from nine angles.
Find the subject directory containing the fsaverage subject (or others) on disk.
Create a coloredmesh from an annotation of an atlas.
Draw a coloredbar into the current plot.
Download optional data for this package if required.
Create a coloredmesh from a mask.
fs.value.list.from.agg.res
Create a named value list from a dataframe.
Perform tests for group differences on paired or unpaired data for two groups.
Merge the annotations from two hemispheres into one annot.
subject.filepath.morph.native
Construct filepath of native space morphometry data file.
Construct filepath of any freesurfer file.
Draw a coloredmesh using a style.
Aggregate standard space morphometry data over brain atlas regions and subjects for a group of subjects.
Aggregate native space morphometry data over brain atlas regions and subjects for a group of subjects.
Aggregate standard space (fsaverage) morphometry data over one hemisphere for a group of subjects.
Transform first character of a string to uppercase.
Visualize arbitrary data on the surface of any subject.
Visualize a vertex mask on the surface of a subject.
Visualize a list of colored meshes in a single scene.
Retrieve native space morphometry data for a group of subjects.
Get the default visualization style parameters as a named list.
Give suggestions for regions to ignore for an atlas.
Read subjects file
Determine atlas region names from a subject.
group.multimorph.agg.native
Aggregate native space morphometry data for multiple measures over hemispheres for a group of subjects.
Visualize an annotation for a subject.
write.region.values.fsaverage
Write one value per atlas region for a template subject.
Check for a key in names of rglactions.
vis.rotated.coloredmeshes
Rotate and visualize coloredmeshes, applying a style.
Print a demographics report
Extract a region from an atlas annotation as a label for a group of subjects.
sort.coloredmeshes.by.hemi
Sort coloredmeshes into 2 lists by their 'hemi' property.
test.numerical.meandiff.unpaired
Perform tests for group differences on unpaired data for two groups.
test.numerical.meandiff.paired
Perform tests for group differences on paired data (repeated measurements) for two conditions or time points.
vis.region.values.on.subject
Visualize arbitrary data, one value per atlas region, on the surface of any subject (including template subjects).
Visualize a label for a subject.
Spread a single value for a region to all region vertices.
Get the default visualization style parameters as a named list.
unify.coloredmeshes.colormaps
Recompute the colormaps in the meshes, using data from all meshes.
Load an annotation for a subject.
Write data aggregated over regions to morphometry file for group.
Aggregate native space morphometry data over one hemisphere for a group of subjects.
Create labeldata from a mask.
Write one value per atlas region for a subject.
Extract a region from an atlas annotation as a label for a subject.
subject.filepath.morph.standard
Construct filepath of standard space morphometry data file.
Visualize native space morphometry data for a subject.
Aggregate morphometry data over brain atlas regions for a subject.
vis.subject.morph.standard
Visualize native space morphometry data for a subject.
Retrieve label data for a single subject.
Get file names available in package cache.
Retrieve standard space morphometry data for a single subject.
Retrieve native space morphometry data for a single subject.
Load a surface for a subject.
vis.coloredmeshes.rotating
Visualize a list of colored meshes in a single scene and rotate them, movie-style.
Visualize arbitrary data on the fsaverage template subject, if available.
Create a coloredmesh from an annotation of an atlas.
Delete all data in the package cache.