g3viz (version 0.1.4)

uniprot2pfam: From UniProt ID to Pfam-A domain composition

Description

Map from UniProt ID to Pfam-A domain compostion.

Usage

uniprot2pfam(uniprot.id)

Arguments

uniprot.id

UniProt ID

Value

a data frame with columns

• uniprot --- UniProt ID

• length --- protein length

• hmm.acc --- accession number of Pfam HMM model, e.g., PF08563

• hmm.name --- Pfam name, e.g., P53_TAD

• start --- Pfam domain start position

• end --- Pfam domain end position

• type --- Pfam type, including domain/motif/family

Examples

# NOT RUN {
uniprot2pfam("Q5VWM5")  # PRAMEF9; PRAMEF15
uniprot2pfam("P04637")



# }