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g3viz (version 0.1.4)
Visualize Genomic Mutation Data Using an Interactive Lollipop Diagram
Description
R interface for 'g3viz' JavaScript library. Using an interactive lollipop diagram to visualize genomic mutation data in a web browser.
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Install
install.packages('g3viz')
Monthly Downloads
136
Version
0.1.4
License
MIT + file LICENSE
Issues
17
Pull Requests
0
Stars
30
Forks
17
Repository
https://github.com/G3js/lollipopR
Maintainer
Xin Guo
Last Published
January 23rd, 2019
Functions in g3viz (0.1.4)
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guessMAFColumnName
Guess column name for MAF file
getMutationsFromCbioportal
Query cancer genomic mutation data from cBioPortal
mapMutationTypeToMutationClass
Map from mutation type (aka, variant classification) to mutation class
hgnc2pfam
Map from Hugo symbol to Pfam domains
mutation.table.df
Default mapping table between mutation type (aka, variant classification) to mutation class
readMAF
Read MAF file
parseProteinChange
Extract
amino_acid_position
from
Protein_Change
g3Lollipop.options
G3Lollipop plot options
g3Lollipop-shiny
Shiny bindings for g3Lollipop
hgnc2uniprot
Mapping from Hugo symbol to UniProt IDs
hgnc2pfam.df
Mapping table between gene.symbol, uniprot.id, and pfam
uniprot2pfam
From UniProt ID to Pfam-A domain composition
g3Lollipop
G3Lollipop diagram for mutation data