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g3viz (version 0.1.4)

Visualize Genomic Mutation Data Using an Interactive Lollipop Diagram

Description

R interface for 'g3viz' JavaScript library. Using an interactive lollipop diagram to visualize genomic mutation data in a web browser.

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Version

Install

install.packages('g3viz')

Monthly Downloads

284

Version

0.1.4

License

MIT + file LICENSE

Issues

19

Pull Requests

0

Stars

31

Forks

19

Maintainer

Xin Guo

Last Published

January 23rd, 2019

Functions in g3viz (0.1.4)

guessMAFColumnName

Guess column name for MAF file
getMutationsFromCbioportal

Query cancer genomic mutation data from cBioPortal
mapMutationTypeToMutationClass

Map from mutation type (aka, variant classification) to mutation class
hgnc2pfam

Map from Hugo symbol to Pfam domains
mutation.table.df

Default mapping table between mutation type (aka, variant classification) to mutation class
readMAF

Read MAF file
parseProteinChange

Extract amino_acid_position from Protein_Change
g3Lollipop.options

G3Lollipop plot options
g3Lollipop-shiny

Shiny bindings for g3Lollipop
hgnc2uniprot

Mapping from Hugo symbol to UniProt IDs
hgnc2pfam.df

Mapping table between gene.symbol, uniprot.id, and pfam
uniprot2pfam

From UniProt ID to Pfam-A domain composition
g3Lollipop

G3Lollipop diagram for mutation data