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genefilter (version 1.50.0)
genefilter: methods for filtering genes from high-throughput experiments
Description
Some basic functions for filtering genes
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1.54.2
1.54.1
1.52.0
1.50.0
1.48.1
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Version
1.50.0
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in genefilter (1.50.0)
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filter_volcano
Volcano plot for overall variance filtering
filtered_p
Compute and adjust p-values, with filtering
pOverA
A filter function to filter according to the proportion of elements larger than A.
rejection_plot
Plot rejections vs. p-value cutoff
rowFtests
t-tests and F-tests for rows or columns of a matrix
rowpAUCs-methods
Rowwise ROC and pAUC computation
filterfun
Creates a first FALSE exiting function from the list of filter functions it is given.
findLargest
Find the Entrez Gene ID corresponding to the largest statistic
genefinder
Finds genes that have similar patterns of expression.
half.range.mode
Mode estimation for continuous data
rowROC-class
Class "rowROC"
rowSds
Row variance and standard deviation of a numeric array
Anova
A filter function for Analysis of Variance
coxfilter
A filter function for univariate Cox regression.
ttest
A filter function for a t.test
kappa_p
Compute proportionality constant for fold change bound.
kOverA
A filter function for k elements larger than A.
gapFilter
A filter to select genes based on there being a gap.
genefilter
A function to filter genes.
dist2
Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix.
eSetFilter
A function to filter an eSet object
tdata
A small test dataset of Affymetrix Expression data.
shorth
A location estimator based on the shorth
cv
A filter function for the coefficient of variation.
genefilter-deprecated
Deprecated Functions in package
genefilter
maxA
A filter function to filter according to the maximum.
nsFilter
Filtering of Features in an ExpressionSet