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genefilter (version 1.50.0)

genefilter: methods for filtering genes from high-throughput experiments

Description

Some basic functions for filtering genes

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Version

Version

1.50.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in genefilter (1.50.0)

filter_volcano

Volcano plot for overall variance filtering
filtered_p

Compute and adjust p-values, with filtering
pOverA

A filter function to filter according to the proportion of elements larger than A.
rejection_plot

Plot rejections vs. p-value cutoff
rowFtests

t-tests and F-tests for rows or columns of a matrix
rowpAUCs-methods

Rowwise ROC and pAUC computation
filterfun

Creates a first FALSE exiting function from the list of filter functions it is given.
findLargest

Find the Entrez Gene ID corresponding to the largest statistic
genefinder

Finds genes that have similar patterns of expression.
half.range.mode

Mode estimation for continuous data
rowROC-class

Class "rowROC"
rowSds

Row variance and standard deviation of a numeric array
Anova

A filter function for Analysis of Variance
coxfilter

A filter function for univariate Cox regression.
ttest

A filter function for a t.test
kappa_p

Compute proportionality constant for fold change bound.
kOverA

A filter function for k elements larger than A.
gapFilter

A filter to select genes based on there being a gap.
genefilter

A function to filter genes.
dist2

Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix.
eSetFilter

A function to filter an eSet object
tdata

A small test dataset of Affymetrix Expression data.
shorth

A location estimator based on the shorth
cv

A filter function for the coefficient of variation.
genefilter-deprecated

Deprecated Functions in package genefilter
maxA

A filter function to filter according to the maximum.
nsFilter

Filtering of Features in an ExpressionSet