genefilter v1.54.2
genefilter: methods for filtering genes from high-throughput experiments
Some basic functions for filtering genes
Functions in genefilter
| Name | Description | |
| rowFtests | t-tests and F-tests for rows or columns of a matrix | |
| findLargest | Find the Entrez Gene ID corresponding to the largest statistic | |
| kOverA | A filter function for k elements larger than A. | |
| cv | A filter function for the coefficient of variation. | |
| filter_volcano | Volcano plot for overall variance filtering | |
| genefinder | Finds genes that have similar patterns of expression. | |
| filterfun | Creates a first FALSE exiting function from the list of filter functions it is given. | |
| tdata | A small test dataset of Affymetrix Expression data. | |
| rowROC-class | Class "rowROC" | |
| coxfilter | A filter function for univariate Cox regression. | |
| filtered_p | Compute and adjust p-values, with filtering | |
| maxA | A filter function to filter according to the maximum. | |
| nsFilter | Filtering of Features in an ExpressionSet | |
| rowSds | Row variance and standard deviation of a numeric array | |
| gapFilter | A filter to select genes based on there being a gap. | |
| shorth | A location estimator based on the shorth | |
| rejection_plot | Plot rejections vs. p-value cutoff | |
| rowpAUCs-methods | Rowwise ROC and pAUC computation | |
| eSetFilter | A function to filter an eSet object | |
| dist2 | Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix. | |
| kappa_p | Compute proportionality constant for fold change bound. | |
| ttest | A filter function for a t.test | |
| half.range.mode | Mode estimation for continuous data | |
| pOverA | A filter function to filter according to the proportion of elements larger than A. | |
| Anova | A filter function for Analysis of Variance | |
| genescale | Scales a matrix or vector. | |
| genefilter | A function to filter genes. | |
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Details
| License | Artistic-2.0 |
| LazyLoad | yes |
| LazyData | yes |
| Collate | AllClasses.R AllGenerics.R all.R dist2.R eSetFilter.R fastT.R filter_volcano.R filtered_p.R genefinder.R half.range.mode.R kappa_p.R nsFilter.R rejection_plot.R rowROC-accessors.R rowSds.R rowpAUCs-methods.R rowttests-methods.R shorth.R zzz.R |
| biocViews | Microarray |
| VignetteBuilder | knitr |
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