1.54.2

Artistic-2.0

February 15th, 2017

rowFtests

t-tests and F-tests for rows or columns of a matrix

findLargest

Find the Entrez Gene ID corresponding to the largest statistic

kOverA

A filter function for k elements larger than A.

cv

A filter function for the coefficient of variation.

filter_volcano

Volcano plot for overall variance filtering

genefinder

Finds genes that have similar patterns of expression.

filterfun

Creates a first FALSE exiting function from the list of
filter functions it is given.

tdata

A small test dataset of Affymetrix Expression data.

rowROC-class

Class "rowROC"

coxfilter

A filter function for univariate Cox regression.

filtered_p

Compute and adjust p-values, with filtering

maxA

A filter function to filter according to the maximum.

nsFilter

Filtering of Features in an ExpressionSet

rowSds

Row variance and standard deviation of a numeric array

gapFilter

A filter to select genes based on there being a gap.

shorth

A location estimator based on the shorth

rejection_plot

Plot rejections vs. p-value cutoff

rowpAUCs-methods

Rowwise ROC and pAUC computation

eSetFilter

A function to filter an eSet object

dist2

Calculate an n-by-n matrix by applying a function to
all pairs of columns of an m-by-n matrix.

kappa_p

Compute proportionality constant for fold change bound.

ttest

A filter function for a t.test

half.range.mode

Mode estimation for continuous data

pOverA

A filter function to filter according to the proportion of
elements larger than A.

Anova

A filter function for Analysis of Variance

genescale

Scales a matrix or vector.

genefilter

A function to filter genes.