# genefilter v1.54.2

## genefilter: methods for filtering genes from high-throughput experiments

Some basic functions for filtering genes

## Functions in genefilter

Name | Description | |

rowFtests | t-tests and F-tests for rows or columns of a matrix | |

findLargest | Find the Entrez Gene ID corresponding to the largest statistic | |

kOverA | A filter function for k elements larger than A. | |

cv | A filter function for the coefficient of variation. | |

filter_volcano | Volcano plot for overall variance filtering | |

genefinder | Finds genes that have similar patterns of expression. | |

filterfun | Creates a first FALSE exiting function from the list of filter functions it is given. | |

tdata | A small test dataset of Affymetrix Expression data. | |

rowROC-class | Class "rowROC" | |

coxfilter | A filter function for univariate Cox regression. | |

filtered_p | Compute and adjust p-values, with filtering | |

maxA | A filter function to filter according to the maximum. | |

nsFilter | Filtering of Features in an ExpressionSet | |

rowSds | Row variance and standard deviation of a numeric array | |

gapFilter | A filter to select genes based on there being a gap. | |

shorth | A location estimator based on the shorth | |

rejection_plot | Plot rejections vs. p-value cutoff | |

rowpAUCs-methods | Rowwise ROC and pAUC computation | |

eSetFilter | A function to filter an eSet object | |

dist2 | Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix. | |

kappa_p | Compute proportionality constant for fold change bound. | |

ttest | A filter function for a t.test | |

half.range.mode | Mode estimation for continuous data | |

pOverA | A filter function to filter according to the proportion of elements larger than A. | |

Anova | A filter function for Analysis of Variance | |

genescale | Scales a matrix or vector. | |

genefilter | A function to filter genes. | |

No Results! |

## Last year downloads

## Details

License | Artistic-2.0 |

LazyLoad | yes |

LazyData | yes |

Collate | AllClasses.R AllGenerics.R all.R dist2.R eSetFilter.R fastT.R filter_volcano.R filtered_p.R genefinder.R half.range.mode.R kappa_p.R nsFilter.R rejection_plot.R rowROC-accessors.R rowSds.R rowpAUCs-methods.R rowttests-methods.R shorth.R zzz.R |

biocViews | Microarray |

VignetteBuilder | knitr |

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