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genefilter (version 1.52.0)

genefilter: methods for filtering genes from high-throughput experiments

Description

Some basic functions for filtering genes

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Version

Version

1.52.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in genefilter (1.52.0)

filtered_p

Compute and adjust p-values, with filtering
rowSds

Row variance and standard deviation of a numeric array
rowROC-class

Class "rowROC"
filter_volcano

Volcano plot for overall variance filtering
coxfilter

A filter function for univariate Cox regression.
genefinder

Finds genes that have similar patterns of expression.
Anova

A filter function for Analysis of Variance
half.range.mode

Mode estimation for continuous data
shorth

A location estimator based on the shorth
tdata

A small test dataset of Affymetrix Expression data.
dist2

Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix.
eSetFilter

A function to filter an eSet object
gapFilter

A filter to select genes based on there being a gap.
genefilter

A function to filter genes.
ttest

A filter function for a t.test
cv

A filter function for the coefficient of variation.
genefilter-deprecated

Deprecated Functions in package genefilter
maxA

A filter function to filter according to the maximum.
nsFilter

Filtering of Features in an ExpressionSet
rowFtests

t-tests and F-tests for rows or columns of a matrix
rowpAUCs-methods

Rowwise ROC and pAUC computation
filterfun

Creates a first FALSE exiting function from the list of filter functions it is given.
findLargest

Find the Entrez Gene ID corresponding to the largest statistic
kappa_p

Compute proportionality constant for fold change bound.
kOverA

A filter function for k elements larger than A.
rejection_plot

Plot rejections vs. p-value cutoff
pOverA

A filter function to filter according to the proportion of elements larger than A.