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genefilter (version 1.54.1)
genefilter: methods for filtering genes from high-throughput experiments
Description
Some basic functions for filtering genes
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1.54.2
1.54.1
1.52.0
1.50.0
1.48.1
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Version
1.54.1
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in genefilter (1.54.1)
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filtered_p
Compute and adjust p-values, with filtering
filterfun
Creates a first FALSE exiting function from the list of filter functions it is given.
kOverA
A filter function for k elements larger than A.
maxA
A filter function to filter according to the maximum.
half.range.mode
Mode estimation for continuous data
kappa_p
Compute proportionality constant for fold change bound.
rowSds
Row variance and standard deviation of a numeric array
shorth
A location estimator based on the shorth
findLargest
Find the Entrez Gene ID corresponding to the largest statistic
gapFilter
A filter to select genes based on there being a gap.
nsFilter
Filtering of Features in an ExpressionSet
pOverA
A filter function to filter according to the proportion of elements larger than A.
Anova
A filter function for Analysis of Variance
rejection_plot
Plot rejections vs. p-value cutoff
coxfilter
A filter function for univariate Cox regression.
rowFtests
t-tests and F-tests for rows or columns of a matrix
rowpAUCs-methods
Rowwise ROC and pAUC computation
rowROC-class
Class "rowROC"
cv
A filter function for the coefficient of variation.
dist2
Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix.
genefilter
A function to filter genes.
genefinder
Finds genes that have similar patterns of expression.
tdata
A small test dataset of Affymetrix Expression data.
ttest
A filter function for a t.test
eSetFilter
A function to filter an eSet object
filter_volcano
Volcano plot for overall variance filtering