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genefilter (version 1.54.1)

genefilter: methods for filtering genes from high-throughput experiments

Description

Some basic functions for filtering genes

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Version

Version

1.54.1

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in genefilter (1.54.1)

filtered_p

Compute and adjust p-values, with filtering
filterfun

Creates a first FALSE exiting function from the list of filter functions it is given.
kOverA

A filter function for k elements larger than A.
maxA

A filter function to filter according to the maximum.
half.range.mode

Mode estimation for continuous data
kappa_p

Compute proportionality constant for fold change bound.
rowSds

Row variance and standard deviation of a numeric array
shorth

A location estimator based on the shorth
findLargest

Find the Entrez Gene ID corresponding to the largest statistic
gapFilter

A filter to select genes based on there being a gap.
nsFilter

Filtering of Features in an ExpressionSet
pOverA

A filter function to filter according to the proportion of elements larger than A.
Anova

A filter function for Analysis of Variance
rejection_plot

Plot rejections vs. p-value cutoff
coxfilter

A filter function for univariate Cox regression.
rowFtests

t-tests and F-tests for rows or columns of a matrix
rowpAUCs-methods

Rowwise ROC and pAUC computation
rowROC-class

Class "rowROC"
cv

A filter function for the coefficient of variation.
dist2

Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix.
genefilter

A function to filter genes.
genefinder

Finds genes that have similar patterns of expression.
tdata

A small test dataset of Affymetrix Expression data.
ttest

A filter function for a t.test
eSetFilter

A function to filter an eSet object
filter_volcano

Volcano plot for overall variance filtering