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geneplotter (version 1.48.0)

Graphics related functions for Bioconductor

Description

Functions for plotting genomic data

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Version

Version

1.48.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in geneplotter (1.48.0)

amplicon.plot

Create an amplicon plot
alongChrom

A function for plotting expression data from an ExpressionSet for a given chromosome.
expressionSet133a

A small dataset for testing
cScale

A function for mapping chromosome length to a number of points.
make.chromOrd

Make a chromOrd object
Makesense

Produce Smoothed Sense/Anti-sense For All Chromosomes
cColor

A function for marking specific probes on a cPlot.
cPlot

A plotting function for chromosomes.
plotMA-methods

Generate an MA plot
savepng

Save the contents of the current graphics device to a file
GetColor

A function to get the Red-Blue color scheme used by dChip
groupedHeatmap

Heatmap of a matrix with grouped rows and columns
openHtmlPage

Open and close an HTML file for writing.
multiecdf

Multiple empirical cumulative distribution functions (ecdf) and densities
histStack

Stacked histogram
imageMap-methods

Write an HTML IMG tag together with a MAP image map.
plotChr

Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph

A function to plot a graph colored by expression data