Contingency-test: Exact test on a single contingency table
Description
Performs an exact conditional contingency-table test. There are many other ways of doing this in R but this function replicates the functionality of earlier genepop code analysing a contingency table provided in a file with ad hoc format. See this section of the Genepop executable documentation for more information on the statistical methods.
Usage
struc(
inputFile,
settingsFile = "",
dememorization = 10000,
batches = 100,
iterations = 5000,
verbose = interactive()
)
Value
The path of the output file is returned invisibly.
Arguments
- inputFile
character: The path of the input file. This file should be in an ad hoc format
- settingsFile
character: The path of the settings file
- dememorization
integer: length of dememorization step of Markov chain algorithm
- batches
integer: Number of batches
- iterations
integer: Iterations per batch
- verbose
logical: whether to print some information
Examples
Run this codelocinfile <- genepopExample('structest.txt')
struc(locinfile)
if ( ! interactive()) clean_workdir(otherfiles='structest.txt')
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