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genepop (version 1.2.2)

Population Genetic Data Analysis Using Genepop

Description

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

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Version

Install

install.packages('genepop')

Monthly Downloads

680

Version

1.2.2

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

January 19th, 2023

Functions in genepop (1.2.2)

setRandomSeed

Set random generator seed (except for Mantel test)
setMantelSeed

Set random generator seed for Mantel test
set_restriction

Programming utilities
genepopExample

Copy an example file from the Genepop package distribution
genepop-internals

Internal genepop Functions
genepop-package

Population genetic analyses using the Genepop software
Hardy-Weinberg

Tests of Hardy-Weinberg genotypic proportions
Linkage

Tables and exact test for genotypic linkage disequilibrium
Fst

Fst (or rho_ST) estimation
IBD

Isolation by distance
Contingency-test

Exact test on a single contingency table
Nm_private

Private allele method
clean_workdir

Removing files created by Genepop
GUI

Call an experimental GUI for Genepop
basic_info

Allele and genotype frequencies
Differentiation

Tests of genic and genotypic differentiation
conversion

File conversions
genedivFis

Gene diversities and Fis (or rho_IS)
manipulation

Various data manipulation utilities
nulls

Estimation of allele frequencies under genotyping failure.