ScoreMatrixList-class

The resulting object is an extension of a <code>list</code> object, where each element corresponds to a score matrix object

A package for summary and annotation of genomic intervals. Users can visualize and 
	quantify genomic intervals over pre-defined functional regions, such as promoters, exons, 
	introns, etc. The genomic intervals represent regions with a defined chromosome position,
	which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, 
	methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal 
	information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Altuna Akalin

genomation

Summary, annotation and visualization of genomic data

ScoreMatrixList-class function

see <code><a href="/link/ScoreMatrixList?package=genomation&version=1.4.2" rd-options="" data-mini-rdoc="genomation::ScoreMatrixList">ScoreMatrixList</a></code>

Constructors

as(from, "ScoreMatrixList"): Creates a <code>ScoreMatrixList</code> object from a list containing <code><a href="/link/ScoreMatrix?package=genomation&version=1.4.2" rd-options="" data-mini-rdoc="genomation::ScoreMatrix">ScoreMatrix</a></code> or <code><a href="/link/ScoreMatrixBin?package=genomation&version=1.4.2" rd-options="" data-mini-rdoc="genomation::ScoreMatrixBin">ScoreMatrixBin</a></code> objects.

Coercion

In the code snippets below, x is a ScoreMatrixList object.<code>x[[i]]</code>,<code>x[[i]]</code>: Get or set elements <code>i</code>, where <code>i</code> is a numeric or character vector of length 1.<code>x$name</code>, <code>x$name</code>: value: Get or set element <code>name</code>, where <code>name</code> is a name or character vector of length 1.

ScoreMatrixList-class: An S4 class for storing a set of `ScoreMatrixList`

Description

Arguments

Constructors

Coercion

Subsetting

See Also