cage

Location and tag per million values for CAGE TSS clusters on chr21 and chr22
of human genome (hg19 assembly). The clusters are dowloaded from ENCODE project
downloads for NHEK cells.

A package for summary and annotation of genomic intervals. Users can visualize and 
	quantify genomic intervals over pre-defined functional regions, such as promoters, exons, 
	introns, etc. The genomic intervals represent regions with a defined chromosome position,
	which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, 
	methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal 
	information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Altuna Akalin

genomation

Summary, annotation and visualization of genomic data

cage function

<code><a href="/link/GRanges?package=genomation&version=1.4.2" rd-options="" data-mini-rdoc="genomation::GRanges">GRanges</a></code> object

cage: Example CAGE data set.

Description

Arguments

format