convertBed2Introns

convertBed2Introns,data.frame-method

a data.frame where column order and content
resembles a bed file with 12 columns

bed.df

convert a data frame read-in from a bed file to a GRanges object for introns

A package for summary and annotation of genomic intervals. Users can visualize and 
	quantify genomic intervals over pre-defined functional regions, such as promoters, exons, 
	introns, etc. The genomic intervals represent regions with a defined chromosome position,
	which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, 
	methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal 
	information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

convertBed2Introns: convert a data frame read-in from a bed file to a GRanges object for introns

Description

Usage

Arguments

Value

Examples