cpgi

CpG islands of hg19 assembly of human genome on chr21 and chr22. Downloaded
from UCSC genome browser.

A package for summary and annotation of genomic intervals. Users can visualize and 
	quantify genomic intervals over pre-defined functional regions, such as promoters, exons, 
	introns, etc. The genomic intervals represent regions with a defined chromosome position,
	which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, 
	methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal 
	information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Altuna Akalin

genomation

Summary, annotation and visualization of genomic data

cpgi function

<code><a href="/link/GRanges?package=genomation&version=1.4.2" rd-options="" data-mini-rdoc="genomation::GRanges">GRanges</a></code> object

cpgi: Example CpG island data set.

Description

Arguments

format