getFlanks

getFlanks,GRanges-method

grange

number of basepairs for the flanking regions

flank

If set to TRUE, flanks overlapping with other main features
              will be trimmed, and overlapping flanks will be removed.
              This will remove multiple counts when other features overlap
              with flanks

clean

Function to get upstream and downstream adjecent regions to a genomic feature such as CpG islands

A package for summary and annotation of genomic intervals. Users can visualize and 
	quantify genomic intervals over pre-defined functional regions, such as promoters, exons, 
	introns, etc. The genomic intervals represent regions with a defined chromosome position,
	which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, 
	methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal 
	information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

getFlanks: Function to get upstream and downstream adjecent regions to a genomic feature such as CpG islands

Description

Usage

Arguments

Value

Examples