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genphen

A tool for computing genotype-phenotype associations using statistical learning techniques.

Main procedures:

  • runGenphenSnp
  • runGenphenSaap

Plotting procedures:

  • plotSpecificGenotype
  • plotGenphenResults
  • plotManhattan

See package manual in folder inst/doc/ for more information.

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Version

Version

1.0.0

License

GPL (>= 2)

Maintainer

Simo Kitanovski

Last Published

February 15th, 2017

Functions in genphen (1.0.0)

runGenphenSaap

Performing genetic association analysis between SAAPs and phenotypes
genotype.snp.msa

SNP genotype dataset (msa)
genotype.saap

SAAP genotype dataset
plotManhattan

Visualizing genphen results with Manhattan plots
plotSpecificGenotype

Visualizing specific genotypes
phenotype.saap

Phenotype dataset
plotGenphenResults

Visualizing GWAS results
phenotype.snp

Phenotype dataset
runGenphenSnp

Performing genetic association analysis between SNPs and phenotypes
genotype.saap.msa

SAAP genotype dataset (msa)
genotype.snp

SNP genotype dataset