phenotype.saap


The phenotype data is a numerical vector of length 120. It represents 120
measured phenotypes for 120 organisms. We used it as a dependent variable
in combination with the genotype.saap data, and quantified the association
between each of the SAAP and the phenotype.


dataset

Given a set of genetic polymorphisms in the form of single
nucleotide poylmorphisms or single amino acid polymorphisms and
a corresponding phenotype data, often we are interested to
quantify their association such that we can identify the causal
polymorphisms. Using statistical learning techniques such as
random forests and support vector machines, this tool provides
the means to estimate genotype-phenotype associations. It also
provides visualization functions which enable the user to
visually inspect the results of such genetic association study
and conveniently select the genotypes which have the highest
strenght ofassociation with the phenotype.

Simo Kitanovski

genphen

A tool for computing genotype-phenotype associations using
statistical learning techniques

phenotype.saap function

A numerical vecotr with 120 elements (organisms) which correspond to the rows
of he genotype data.

Format

The phenotype data is a numerical vector of length 120. It represents 120
measured phenotypes for 120 organisms. We used it as a dependent variable
in combination with the genotype.saap data, and quantified the association
between each of the SAAP and the phenotype.

phenotype.saap: Phenotype dataset

Description

Usage

Arguments

Value

Format

Examples