getMotifFromMEME

<code>getMotifFromMEME</code> Extract motif information from the MEME software results.

Extract and visualize motif information from XML file from MEME software.
In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread
and usually assumed to be related to specifical biological functions.
There exist many software was used to discover motif sequences from a set of nucleotide
or amino acid sequences. MEME is almost the most used software to detect motif.
It's difficult for biologists to extract and visualize the location of a motif
on sequences from the results from MEME software.

Xiang LI

ggmotif

Extract and Visualize Motif Information from MEME Software

getMotifFromMEME function

<dl><dt>data</dt>
<dd>A txt file from MEME software.</dd>
<dt>format</dt>
<dd>The result format from MEME, txt or xml.</dd></dl>

Arguments

Xiang LI &lt;lixiang117423@foxmail.com&gt;

Author

Extract and Visualize Motif Information from MEME Software — getMotifFromMEME

<dl>

<dt>data</dt>
<dd>A txt file from MEME software.</dd>


<dt>format</dt>
<dd>The result format from MEME, txt or xml.</dd>

</dl>

getMotifFromMEME: Extract and Visualize Motif Information from MEME Software

Description

Value

Arguments

Author

Examples