geom_msa

multiple sequence alignment in tidy data frame, generated by tidy_fasta()

data

Character font, Defaults is 'helvetica_regular'.

font

A Color scheme. One of 'Clustal', 'Chemistry_AA', 'Shapely_AA', 'Zappo_AA', 'Taylor_AA', 'Chemistry_NT', 'Shapely_NT', 'Zappo_NT', 'Taylor_NT'. Defaults is 'Clustal'.

color

Multiple sequence alignment layer for ggplot2. It creats background frames with/without sequence labels.

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

geom_msa: geom_msa

Description

Usage

Arguments

Value