build_design_matrix

Creates a design matrix incorporating the group variable and optional covariates.

internal

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

build_design_matrix function

<dl><dt>metadata</dt>
<dd>A data frame containing sample metadata</dd>
<dt>group</dt>
<dd>A character string specifying the grouping variable column name</dd>
<dt>covariates</dt>
<dd>A character vector of covariate column names (optional)</dd></dl>

Arguments

Build design matrix for limma analysis — build_design_matrix

<dl>

<dt>metadata</dt>
<dd>A data frame containing sample metadata</dd>


<dt>group</dt>
<dd>A character string specifying the grouping variable column name</dd>


<dt>covariates</dt>
<dd>A character vector of covariate column names (optional)</dd>

</dl>

build_design_matrix: Build design matrix for limma analysis

Description

Usage

Value

Arguments