calculate_pseudocount

Calculates a pseudocount based on the data to avoid log(0) issues.
Uses half of the minimum non-zero value to ensure the pseudocount
is smaller than any real value in the data.

internal

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

calculate_pseudocount function

<dl><dt>values</dt>
<dd>Numeric vector of abundance values</dd></dl>

Arguments

Calculate data-driven pseudocount for log transformation — calculate_pseudocount

<dl>

<dt>values</dt>
<dd>Numeric vector of abundance values</dd>

</dl>

calculate_pseudocount: Calculate data-driven pseudocount for log transformation

Description

Usage

Value

Arguments