format_pvalue_smart

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

format_pvalue_smart function

<dl><dt>p_values</dt>
<dd>Numeric vector of p-values</dd>
<dt>format</dt>
<dd>Character string specifying format type</dd>
<dt>stars</dt>
<dd>Logical, whether to include star symbols</dd>
<dt>thresholds</dt>
<dd>Numeric vector of significance thresholds</dd>
<dt>star_symbols</dt>
<dd>Character vector of star symbols</dd></dl>

Arguments

Smart P-value Formatting — format_pvalue_smart

<dl>

<dt>p_values</dt>
<dd>Numeric vector of p-values</dd>


<dt>format</dt>
<dd>Character string specifying format type</dd>


<dt>stars</dt>
<dd>Logical, whether to include star symbols</dd>


<dt>thresholds</dt>
<dd>Numeric vector of significance thresholds</dd>


<dt>star_symbols</dt>
<dd>Character vector of star symbols</dd>

</dl>

format_pvalue_smart: Smart P-value Formatting

Description

Usage

Value

Arguments