kegg_pathway_reference

A reference dataset mapping KEGG pathway IDs to their human-readable names.
Used internally by ggpicrust2 for pathway annotation in DAA and GSEA results.

datasets

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

kegg_pathway_reference function

A data frame with 505 observations and the following columns:<dl>
 <dt><code>pathway</code></dt>
<dd>Character. KEGG pathway ID in the format "koXXXXX" (e.g., "ko00010")</dd> <dt><code>pathway_name</code></dt>
<dd>Character. Human-readable pathway name (e.g., "Glycolysis / Gluconeogenesis")</dd> 
</dl>

Format

KEGG Pathway Name Reference Dataset — kegg_pathway_reference

A data frame with 505 observations and the following columns:<dl>
 <dt><code>pathway</code></dt>
<dd>Character. KEGG pathway ID in the format "koXXXXX" (e.g., "ko00010")</dd>

 <dt><code>pathway_name</code></dt>
<dd>Character. Human-readable pathway name (e.g., "Glycolysis / Gluconeogenesis")</dd>

 
</dl>

kegg_pathway_reference: KEGG Pathway Name Reference Dataset

Description

Usage

Arguments

Format

Examples