metacyc_reference

A reference dataset mapping MetaCyc pathway identifiers to their descriptions.
Used internally by ggpicrust2 for annotating MetaCyc pathway analysis results.

datasets

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

metacyc_reference function

A data frame with 2714 observations and the following columns:<dl>
 <dt><code>id</code></dt>
<dd>Character. MetaCyc pathway identifier (e.g., "GLYCOLYSIS", "TCA")</dd> <dt><code>description</code></dt>
<dd>Character. Human-readable pathway description</dd> 
</dl>

Format

MetaCyc Pathway Reference Dataset — metacyc_reference

A data frame with 2714 observations and the following columns:<dl>
 <dt><code>id</code></dt>
<dd>Character. MetaCyc pathway identifier (e.g., "GLYCOLYSIS", "TCA")</dd>

 <dt><code>description</code></dt>
<dd>Character. Human-readable pathway description</dd>

 
</dl>

metacyc_reference: MetaCyc Pathway Reference Dataset

Description

Usage

Arguments

Format

Examples