ggseqlogo v0.1

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A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Functions in ggseqlogo

Name Description
geom_logo Plots sequence logo as a layer on ggplot
ggseqlogo Quick sequence logo plot
seqs_aa List of aligned kinase-substrate binding sequences
seqs_dna List of aligned transcription factor binding sequences
theme_logo ggseqlogo custom theme
make_col_scheme Create new sequence logo color scheme
pfms_dna List of position frequency matrices for transcription factors
list_col_schemes List color schemes available in ggseqlogo
list_fonts List fonts available in ggseqlogo
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Vignettes of ggseqlogo

Name
ggseqlogo_introduction.Rmd
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Details

Type Package
Date 2017-07-25
License LGPL
URL https://github.com/omarwagih/ggseqlogo
BugReports https://github.com/omarwagih/ggseqlogo/issues
Encoding latin1
RoxygenNote 6.0.1
VignetteBuilder knitr
NeedsCompilation no
Packaged 2017-07-25 12:12:06 UTC; omarwagih
Repository CRAN
Date/Publication 2017-07-25 12:24:58 UTC
imports ggplot2
suggests knitr , rmarkdown
Contributors Omar Wagih

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