These methods return a ggplot object with an annotated plot of a reflector_spct object or of the spectra contained in a reflector_mspct object.
# S3 method for reflector_spct
autoplot(object, ...,
w.band = getOption("photobiology.plot.bands", default = list(UVC(),
UVB(), UVA(), PAR())), range = NULL,
plot.qty = getOption("photobiology.reflector.qty", default =
"reflectance"), pc.out = FALSE, label.qty = NULL, span = NULL,
annotations = NULL, time.format = "", tz = "UTC",
text.size = 2.5, idfactor = NULL, ylim = c(NA, NA),
object.label = deparse(substitute(object)), na.rm = TRUE)# S3 method for reflector_mspct
autoplot(object, ..., range = NULL,
plot.data = "as.is")
a reflector_spct object or a reflector_mspct object.
in the case of collections of spectra, additional arguments passed to the plot methods for individual spectra, otherwise currently ignored.
a single waveband object or a list of waveband objects.
an R object on which range() returns a vector of length 2, with min annd max wavelengths (nm).
character string (currently ignored).
logical, if TRUE use percents instead of fraction of one.
character string giving the type of summary quantity to use for labels, one of "mean", "total", "contribution", and "relative".
a peak is defined as an element in a sequence which is greater than all other elements within a window of width span centered at that element.
a character vector.
character Format as accepted by
strptime
.
character Time zone to use for title and/or subtitle.
numeric size of text in the plot decorations.
character Name of an index column in data holding a
factor
with each spectrum in a long-form multispectrum object
corresponding to a distinct spectrum. If idfactor=NULL
the name of
the factor is retrieved from metadata or if no metadata found, the
default "spct.idx" is tried. If idfactor=NA
no aesthetic is mapped
to the spectra and the user needs to use 'ggplot2' functions to manually
map an aesthetic or use facets for the spectra.
numeric y axis limits,
character The name of the object being plotted.
logical.
character Data to plot. Default is "as.is" plotting one line per spectrum. When passing "mean" or "median" as argument all the spectra must contain data at the same wavelength values.
a ggplot
object.
Other autoplot methods: autoplot.calibration_spct
,
autoplot.cps_spct
,
autoplot.filter_spct
,
autoplot.object_spct
,
autoplot.raw_spct
,
autoplot.response_spct
,
autoplot.source_spct
,
autoplot.waveband
# NOT RUN {
autoplot(Ler_leaf_rflt.spct)
# }
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