alongChromTicks

featureColors

plotAlongChromLegend

newVP

writeExportData

getReadPosDf

getChromLengths

coverageOneStrand

windowCountAndGC

plotAllChrom

reduceOneEnd

reduceOneExact


  Called internally by other <code>girafe</code> functions.
  Normally need not be called by the user.


internal

girafe-internal

The package 'girafe' deals with the genome-level
representation of aligned reads from next-generation sequencing
data. It contains an object class for enabling a detailed
description of genome intervals with aligned reads and
functions for comparing, visualising, exporting and working
with such intervals and the aligned reads. As such, the package
interacts with and provides a link between the packages
ShortRead, IRanges and genomeIntervals.

J Toedling

girafe

Genome Intervals and Read Alignments for Functional Exploration

girafe-internal function

Called internally by other <code>girafe</code> functions.
  Normally need not be called by the user.

Internal girafe functions

girafe-internal: Internal girafe functions

Description

Arguments

See Also