Learn R Programming
⚠️There's a newer version (0.2.3) of this package.Take me there.

gprofiler2 (version 0.1.4)

Interface to the 'g:Profiler' Toolset

Description

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Copy Link

Version

Install

install.packages('gprofiler2')

Monthly Downloads

3,503

Version

0.1.4

License

GPL (>= 2)

Maintainer

Liis Kolberg

Last Published

May 24th, 2019

Functions in gprofiler2 (0.1.4)

mapViridis

Map vector of numeric values to Viridis color scale.
gostplot

Manhattan plot of functional enrichment results.
gorth

Orthology search.
gsnpense

Convert SNP rs numbers to genes.
gost

Gene list functional enrichment.
publish_gosttable

Create and save a table with the functional enrichment analysis results.
set_tls_version

Set the TLS version to use for SSL
set_user_agent

Set custom user agent string.
set_base_url

Set the base URL.
get_tls_version

Get the TLS version for SSL
get_user_agent

Get current user agent string.
gconvert

Gene ID conversion.
get_base_url

Get the current base URL.
publish_gostplot

Create and save an annotated Manhattan plot of enrichment results.