gsnpense

vector of SNP IDs to be translated (should start with prefix 'rs').

query

logical indicating whether to filter out results without a
corresponding target name.

filter_na

Interface to the g:Profiler tool g:SNPense that maps SNP rs identifiers to chromosome positions, genes and variant effects.
Available only for human SNPs.

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler>).
The main tools are:
(1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists;
(2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces;
(3) 'g:Orth' - orthology search across species;
(4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects
This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

gsnpense: Convert SNP rs numbers to genes.

Description

Usage

Arguments

Value

Examples