Learn R Programming

groupedSurv (version 1.0.5.1)

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function

Description

These 'Rcpp'-based functions compute the efficient score statistics for grouped time-to-event data (Prentice and Gloeckler, 1978), with the optional inclusion of baseline covariates. Functions for estimating the parameter of interest and nuisance parameters, including baseline hazards, using maximum likelihood are also provided. A parallel set of functions allow for the incorporation of family structure of related individuals (e.g., trios). Note that the current implementation of the frailty model (Ripatti and Palmgren, 2000) is sensitive to departures from model assumptions, and should be considered experimental. For these data, the exact proportional-hazards-model-based likelihood is computed by evaluating multiple variable integration. The integration is accomplished using the 'Cuba' library (Hahn, 2005), and the source files are included in this package. The maximization process is carried out using Brent's algorithm, with the C++ code file from John Burkardt and John Denker (Brent, 2002).

Copy Link

Version

Install

install.packages('groupedSurv')

Monthly Downloads

244

Version

1.0.5.1

License

GPL (>= 2)

Maintainer

Alexander Sibley

Last Published

September 28th, 2023

Functions in groupedSurv (1.0.5.1)

varLLFam

Log-Likelihood of the Frailty Variance for the Discrete-Time Frailty Model
PvalueFam

Estimate P-values of the Efficient Score Statistics for the Frailty Model
alphaEstFam

Estimate the Interval Baseline Survival Rates for the Grouped Failure Time Model
thetaEst

Estimate the Baseline Survival Rates and Covariate Parameters for the Grouped Survival Model
betaEstFam

Estimate the Fixed Effect Parameter for the Frailty Model
geneStat

Compute Gene-Level Statistics Based on Efficient Score Statistics for the Grouped Survival Model
betaEst

Estimate the Parameter of Interest for the Grouped Survival Model
groupedSurv

Compute the Efficient Score Statistic for the Grouped Survival Model
groupedSurvFam

Compute the Efficient Score Statistic for the Frailty Model
varEstFam

Estimate the Frailty Variance for the Frailty Model
groupedSurv-package

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function