haplo.ccs v1.3.1
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Estimate Haplotype Relative Risks in Case-Control Data
'haplo.ccs' estimates haplotype and covariate relative
risks in case-control data by weighted logistic regression.
Diplotype probabilities, which are estimated by EM computation
with progressive insertion of loci, are utilized as weights.
Functions in haplo.ccs
| Name | Description | |
| haplo | Specify an Allele Matrix, Inheritance Mode, and Grouping for Rare Haplotypes | |
| haplo.hpp | Obtain Summaries of Phase Ambiguity | |
| haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data | |
| renin | Example Dataset for 'haplo.ccs' | |
| sandcov | Compute Sandwich Variance-Covariance Estimates | |
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Details
| Type | Package |
| Date | 2011-10-27 |
| License | GPL (>= 2) |
| Packaged | 2012-10-29 08:58:55 UTC; ripley |
| Repository | CRAN |
| Date/Publication | 2012-10-29 08:58:55 |
| depends | base (>= 2.13.0) , haplo , haplo.stats , R (>= 2.13.0) , survival |
| Contributors | Thomas Lumley, Benjamin French |
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