Counts of Total Haplotype Pairs Produced by Genotypes
Get a list of objects for haplotype pairs
Set of haplotypes and frequencies for power and sample size
calculations
Integer Rank Codes for Haplotypes
Search for a trait-locus by sliding a fixed-width window over each marker locus
and scanning all possible haplotype lengths within the window
Compute engine for haplotype EM algorithm
Print and summary of a haplo.glm object
Analysis of variance for haplo.glm model fit
Compute Generalized Inverse of Input Matrix
GLM Regression of Trait on Ambiguous Haplotypes
Sets up a model frame for haplo.glm
Merge haplo.score And haplo.group Objects
Score Statistics for Association of Traits with Haplotypes
Score Statistics for Association of Traits with Haplotypes
Print contents of a haplo.em object
Find beta coefficients for risk haplotypes, for specified r2
Print a haplo.scan object
Print a haplo.group object
Fitted values from haplo.glm fit
Power and sample size for the chi-square distribution
Print a nice banner
Build a design matrix for haplotypes
Haplotype Association Analysis in a Case-Control design
Power and sample size for the F distribution
Frequencies for Haplotypes by Grouping Variable
Create list of control parameters for haplo.glm
Print a haplo.score object
Accessing residuals for haplo.glm fit
Internal functions for the HaploStats package. See the help file for
the main functions (haplo.em, haplo.score, haplo.glm) for details on
some of these functions.
HLA Loci and Serologic Response to Measles Vaccination
Find Location from Mouse Clicks and Print Haplotypes on Plot
Create a group of locus objects from a genotype matrix, assign to
'model.matrix' class.
Creates an object of class "locus"
Plot Haplotype Frequencies versus Haplotype Score Statistics
Simulated data for seqhap examples
Louis Information for haplo.glm
Plot a haplo.score.slide Object
Create the list of control parameters for simulations in haplo.score
consistency checks for x.linked locus
Remove rows with NA in covariates, but keep genotypes with NAs
Sequential Haplotype Scan Association Analysis for Case-Control Data
Print a haplo.score.merge object
Print the contents of a haplo.score.slide object
Summarize Full Haplotype Enumeration on Genotype Matrix
variance-covariance matrix of a fitted haplo.glm object
Plot a seqhap object
Print a haplo.cc object
Summarize contents of a haplo.em object
convert genotype matrix from 1-column 2-column
EM Computation of Haplotype Probabilities, with Progressive Insertion
of Loci
Create the Control Parameters for the EM Computation of Haplotype
Probabilities, with Progressive Insertion of Loci
Compute either power or sample size for haplotype associations with a
quantitative trait.
Compute either power or sample size for haplotype associations in a
case-control study.