hapPower.demo

An example set of haplotypes and frequencies for power and sample size
 calculations in haplo.power.cc and haplo.power.qt

datasets

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Jason Sinnwell

haplo.stats

Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous

hapPower.demo function

A data frame with 21 observations on the following 6 variables.<dl class="dl-horizontal">
 <dt><code>loc.1</code></dt><dd>allele 1 in the haplotype</dd>
 <dt><code>loc.2</code></dt><dd>allele 2 in the haplotype</dd>
 <dt><code>loc.3</code></dt><dd>allele 3 in the haplotype</dd>
 <dt><code>loc.4</code></dt><dd>allele 4 in the haplotype</dd>
 <dt><code>loc.5</code></dt><dd>allele 5 in the haplotype</dd>
 <dt><code>haplo.freq</code></dt><dd>numeric, frequency of haplotype</dd>
 </dl>

Format

Set of haplotypes and frequencies for power and sample size
  calculations — hapPower.demo

A data frame with 21 observations on the following 6 variables.<dl class='dl-horizontal'>
 <dt><code>loc.1</code></dt><dd>allele 1 in the haplotype</dd>
 <dt><code>loc.2</code></dt><dd>allele 2 in the haplotype</dd>
 <dt><code>loc.3</code></dt><dd>allele 3 in the haplotype</dd>
 <dt><code>loc.4</code></dt><dd>allele 4 in the haplotype</dd>
 <dt><code>loc.5</code></dt><dd>allele 5 in the haplotype</dd>
 <dt><code>haplo.freq</code></dt><dd>numeric, frequency of haplotype</dd>
 </dl>

hapPower.demo: Set of haplotypes and frequencies for power and sample size calculations

Description

Usage

Arguments

Format

References

Examples