Tool for Clustering Genotypes in Haplotypes
Description
Function to identify haplotypes
within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP
(Single Nucleotide Polymorphisms) within the QTL. This function groups
together all individuals of a population with the same haplotype.
Each group contains individual with the same allele in each SNP,
whether or not missing data. Thus, haplotyper groups individuals,
that to be imputed, have a non-zero probability of having the same alleles
in the entire sequence of SNP's. Moreover, haplotyper calculates such
probability from relative frequencies.