haplotyper (version 0.1)

Tool for Clustering Genotypes in Haplotypes

Description

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

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Install

install.packages('haplotyper')

Monthly Downloads

101

Version

0.1

License

GPL-3

Maintainer

Last Published

April 6th, 2016

Functions in haplotyper (0.1)