rice_qtl


The data is a QTL for rice Grain Quality


datasets

Function to  identify  haplotypes
within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP
(Single Nucleotide Polymorphisms) within the QTL. This function groups
together all individuals of a population with the same haplotype.
Each group contains individual with the same allele in each SNP,
whether or not missing data. Thus, haplotyper groups individuals,
that to be imputed, have a non-zero probability of having the same alleles
in the entire sequence of SNP's. Moreover, haplotyper calculates such
probability from relative frequencies.

Gaston Quero

haplotyper

Tool for Clustering Genotypes in Haplotypes

rice_qtl function

A data frame 326 rows (individual) and 38 variables (SNPs)

rice_qtl: Real experimental data

Description

Usage

Arguments

Format

Source