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hiPOD (version 1.0)

hierarchical Pooled Optimal Design

Description

Based on hierarchical modeling, this package provides a few practical functions to find and present the optimal designs for a pooled NGS design.

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Version

Install

install.packages('hiPOD')

Monthly Downloads

6

Version

1.0

License

GPL-3

Maintainer

Wei E Liang

Last Published

June 1st, 2012

Functions in hiPOD (1.0)

ncp.pool.pred

prediction model of the non-centrality parameter from simulation results
probDetEqual3

Probability of Detection
diffVariantError

differentiate a variant from sequencing error
PlotOptPower

Plots a contour plot / 3d plot of the power of the potential designs.
FindOptPower

search for the optimal pooled design
hiPOD-package

hierarchial Pooled Optimal Design
ShowOptDesign

Print the top choices of designs
predictPoolNCP

The prediction model of non-centrality parameter
XmeanGivenCost

A function used to find best coverage given cost and other constraints