hiReadsProcessor (version 1.8.2)

replicateReads: Replicate sequences from DNAStringSet object using counts identifier or vector

Description

Given a DNAStringSet object, the function replicates reads using counts=X marker at the end of definition line.

Usage

replicateReads(dnaSet, counts = NULL)

Arguments

dnaSet

DNAStringSet object to replicate.

counts

an integer or a numeric vector of length length(dnaSet) indicating how many times to repeat each sequence. Default is NULL, in which it uses counts=X notation from the definition line to replicate reads.

Value

• DNAStringSet object.

See Also

dereplicateReads, removeReadsWithNs, findBarcodes, splitByBarcode

Examples

dnaSet <- c("CCTGAATCCTGGCAATGTCATCATC", "ATCCTGGCAATGTCATCATCAATGG",
"ATCAGTTGTCAACGGCTAATACGCG", "ATCAATGGCGATTGCCGCGTCTGCA",
"CCGCGTCTGCAATGTGAGGGCCTAA", "GAAGGATGCCAGTTGAAGTTCACAC",
"CCTGAATCCTGGCAATGTCATCATC", "ATCCTGGCAATGTCATCATCAATGG",
"ATCAGTTGTCAACGGCTAATACGCG", "ATCAATGGCGATTGCCGCGTCTGCA",
"CCGCGTCTGCAATGTGAGGGCCTAA", "GAAGGATGCCAGTTGAAGTTCACAC")
dnaSet <- dereplicateReads(dnaSet)
replicateReads(dnaSet)