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hisse (version 1.3)

Hidden State Speciation and Extinction

Description

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

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Version

Install

install.packages('hisse')

Monthly Downloads

2,857

Version

1.3

License

GPL (>= 2)

Maintainer

Jeremy Beaulieu

Last Published

October 3rd, 2015

Functions in hisse (1.3)

hisse.null4

Four state trait-independent Hidden State Speciation and Extinction
MarginRecon

Ancestral State Estimation based on Marginal Reconstruction
SimulateHisse

Simulate under a HiSSE model
SupportRegion

Adaptive Sampling of the Likelihood Surface
TransMatMaker

Transition Rate matrix generator
BisseToHisse

BisseToHisse
SimToPhylo

Convert simulated result to a tree
hisse

Hidden State Speciation and Extinction
plot.hisse.states

Plotting function hisse.states objects