hisse (version 1.3)

BisseToHisse: BisseToHisse

Description

A simple utility function for organizing parameters from diversitree to be in the right format for marginRecon function.

Usage

BisseToHisse(lambda, mu, q01, q10)

Arguments

lambda

a vector containing the parameter estimates for lambda0 and lambda1 from diversitree.

mu

a vector containing the parameter estimates for mu0 and mu1 from diversitree.

q01

the estimate of transition rate from state 0 to state 1 from diversitree.

q10

the estimate of transition rate from state 1 to state 0 from diversitree.

Value

• A simple vector providing the proper format for BiSSE parameters and defaults in HiSSE for use in the marginRecon function.

Examples

#BiSSE ancestral reconstruction
#bisse.pars <- c(0.1, 0.2, 0.03, 0.03, 0.01, 0.01)
#hisse.par.vec <- BisseToHisse(lambda=c(0.1,0.2), mu=c(0.03,0.03), q01=0.01, q10=0.01)