colouring.functions

A list of functions which automatically generate colours for nodes representing HPO terms in plots generated by <code><a href="/link/hpo.graph?package=hpoPlot&version=1.0" rd-options="" data-mini-rdoc="hpoPlot::hpo.graph">hpo.graph</a></code>.

datasets

colour

Functions for visualising a set of HPO-encoded phenotypes in a variety of ways

Daniel Greene

hpoPlot

Functions to plot graphviz style graphs of sets of HPO terms

colouring.functions function

The format is:
List of 4
 $ get.patient.based.colours    :function (hpo.terms, plotting.context)  
 $ get.information.based.colours:function (hpo.terms, plotting.context, colourPalette = colorRampPalette(c("Yellow", 
    "Green", "#0099FF"))(10))  
 $ get.frequency.based.colours  :function (hpo.terms, plotting.context, colour.func = NULL)  
 $ get.white.nodes              :function (hpo.terms, plotting.context)

colouring.functions: List Of Colouring Functions

Description

Arguments

format