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hpoPlot (version 1.0)
Functions to plot graphviz style graphs of sets of HPO terms
Description
Functions for visualising a set of HPO-encoded phenotypes in a variety of ways
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Version
2.4
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1.0
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Install
install.packages('hpoPlot')
Monthly Downloads
58
Version
1.0
License
GPL (>= 2)
Maintainer
Daniel Greene
Last Published
May 10th, 2014
Functions in hpoPlot (1.0)
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suggest.aspect.ratio.width.to.height
Suggest Aspect Ratio For Plot
get.term.patient.matrix
Get Term By Patient Matrix
remove.duplicate.term.sets
Remove Duplicate Term Sets
get.term.adjacency.matrix
Get HPO Term Adjacency Matrix
border.functions
List Of Border Functions
size.functions
List Of Node-Sizing Functions
hpoPlot-package
Functions to plot graphviz style graphs of sets of HPO terms
swap.out.alt.ids
Swap Out Alternative/Previous IDs
colouring.functions
List Of Colouring Functions
clean.terms
Get Leaves Of HPO Term Set
get.node.friendly.long.names
Get Node-Friendly Long Names
remove.uninformative.terms
Remove Uninformative Terms From Set
term.set.list.from.character
Get Term Set List From Character Vector
setDimNames
Set Names For Dimensions Of Array
hpo.graph
Plot HPO Terms
get.cohort.information
Get Information Content Of Terms
get.ancestors
Get ancestor terms of term set
hpo.terms
HPO R-Object
get.hpo.terms
Get HPO As R-Object
labelling.functions
List Of Labelling Functions
get.descendants
Get Descendants