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hpoPlot (version 1.0)

Functions to plot graphviz style graphs of sets of HPO terms

Description

Functions for visualising a set of HPO-encoded phenotypes in a variety of ways

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Version

Install

install.packages('hpoPlot')

Monthly Downloads

24

Version

1.0

License

GPL (>= 2)

Maintainer

Daniel Greene

Last Published

May 10th, 2014

Functions in hpoPlot (1.0)

suggest.aspect.ratio.width.to.height

Suggest Aspect Ratio For Plot
get.term.patient.matrix

Get Term By Patient Matrix
remove.duplicate.term.sets

Remove Duplicate Term Sets
get.term.adjacency.matrix

Get HPO Term Adjacency Matrix
border.functions

List Of Border Functions
size.functions

List Of Node-Sizing Functions
hpoPlot-package

Functions to plot graphviz style graphs of sets of HPO terms
swap.out.alt.ids

Swap Out Alternative/Previous IDs
colouring.functions

List Of Colouring Functions
clean.terms

Get Leaves Of HPO Term Set
get.node.friendly.long.names

Get Node-Friendly Long Names
remove.uninformative.terms

Remove Uninformative Terms From Set
term.set.list.from.character

Get Term Set List From Character Vector
setDimNames

Set Names For Dimensions Of Array
hpo.graph

Plot HPO Terms
get.cohort.information

Get Information Content Of Terms
get.ancestors

Get ancestor terms of term set
hpo.terms

HPO R-Object
get.hpo.terms

Get HPO As R-Object
labelling.functions

List Of Labelling Functions
get.descendants

Get Descendants