Parses a .obo file containing the HPO and returns an R-Object representing the HPO.
Usage
get.hpo.terms( file )
Arguments
file
The location of the .obo file (leave blank to download the current official version from "http://compbio.charite.de/hudson/job/hpo/lastStableBuild/artifact/ontology/release/hp.obo".
Value
idCharacter vector of HPO term IDs
nameCharacter vector of HPO clinical descriptions names
childrenPer-term list of character vectors of direct descedants
parentsPer-term list of character vectors of parent terms
ancestorsPer-term list of character vectors of ancestors
siblingsPer-term list of character vectors of sibling nodes
alt.idPer-term list of character vectors of alternate/previous IDs
date.downloadedDate that the object was constructed
References
Sebastian Kohler,Sandra C Doelken,Christopher J. Mungall,Sebastian Bauer,Helen V. Firth,Isabelle Bailleul-Forestier,Graeme C. M. Black,Danielle L. Brown,Michael Brudno,Jennifer Campbell,David R. FitzPatrick,Janan T. Eppig,Andrew P. Jackson,Kathleen Freson,Marta Girdea,Ingo Helbig,Jane A. Hurst,Johanna Jahn,Laird G. Jackson,Anne M. Kelly,David H. Ledbetter,Sahar Mansour,Christa L. Martin,Celia Moss,Andrew Mumford,Willem H. Ouwehand,Soo-Mi Park,Erin Rooney Riggs,Richard H. Scott,Sanjay Sisodiya,Steven Van Vooren,Ronald J. Wapner,Andrew O. M. Wilkie,Caroline F. Wright,Anneke T. Vulto-van Silfhout,Nicole de Leeuw,Bert B. A. de Vries,Nicole L. Washingthon,Cynthia L. Smith,Monte Westerfield,Paul Schofield,Barbara J. Ruef,Georgios V. Gkoutos,Melissa Haendel,Damian Smedley,Suzanna E. Lewis,and Peter N. Robinson - The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data - Nucl. Acids Res. (1 January 2014) 42 (D1): D966-D974 doi:10.1093/nar/gkt1026