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hsphase (version 1.2.6)
Phasing and imputation of half-sib families using SNP data
Description
Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data
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2.0.3
2.0.2
2.0.1
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1.2.6
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1.2.4
1.2.3
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Install
install.packages('hsphase')
Monthly Downloads
367
Version
1.2.6
License
GPL (>= 3)
Maintainer
Mohammad Ferdosi
Last Published
April 2nd, 2014
Functions in hsphase (1.2.6)
Search functions
hsphase-package
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events for Half-sib Families
readGenotype
Read and Check the Genotype File
hss
Half-sib Family Splitter
recombinations
Recombination Number
ohplot
Opposing Homozygotes Plot
ohd
Opposing Homozygote Detection
bmh
Block Partitioning
hh
Heatmap of Half-sibs
ssp
Sire Imputation and Phasing
ohg
Matrix of Opposing Homozygotes
map
Example of Map File
genotypes
Example of Genotype Data Set
rplot
Recombination Plot
imageplot
Image Plot of Blocking Structure
aio
All-in-one Phasing
pedigreeNaming
Fix Pedigree Errors
cs
Chromosome Splitter
hbp
Haplotype Blocks of Phased Data
rpoh
Reconstruct Pedigree Based on Matrix of Opposing Homozygotes
phf
Half-Sib Family Phasing
pedigree
Example Pedigree
co
Crossover Detection
pm
Probability Matrix
impute
Impute of Low Density SNP Marker to High Density (Paternal Strand)
para
Parallel Analysis of Data
pogc
Parent Offspring Group Constructor