impute(halfsib_genotype_ld, sire_hd, bmh_forwardVectorSize = 30,
bmh_excludeFP = TRUE, bmh_nsap = 3)matrix
half-sib genotypes with low density marker (one half-sib per row, with SNP ordered by mapping position in the columns.
Data should be numeric. Use 0, 1 and 2 respectively for AA, AB and BB. Use 9 for missing data)matrix
haplotype of sire (this parameter can be sequence data or any phased sire - the matrix should have rownames which are the sample
IDs and colnames which are the SNP names)integer number of heterozygous sites used to validate recombination events or check for genotyping errorslogical exclude SNPs that may cause heterozygous sites in the sire due to genotyping errors or map errorsinteger number of SNPs per blockbmh, ssp and phf