create_pdf

Create pdf file with sensorgrams with fitted curves, residuals, table of fit parameters, and response curves.

Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.

Janice McCarthy Developer

htrSPRanalysis

Analysis of Surface Plasmon Resonance Data

Kan Li Dev

S. Moses Dennison 

Georgia D. Tomaras 

create_pdf function

<dl><dt>processed_input</dt>
<dd>Processed_input as returned by <code>process_input</code></dd>
<dt>fits_list</dt>
<dd>List of fits as returned by <code>get_fits</code></dd>
<dt>rc_list</dt>
<dd>List of response curves as returned by <code>get_rc_plots</code></dd>
<dt>plot_list</dt>
<dd>List of plots as returned by <code>get_fitted_plots</code></dd>
<dt>...</dt>
<dd>Arguments passed to the <code>pdf</code> function.</dd></dl>

Arguments

Create pdf file with sensorgrams with fitted curves, residuals, table of fit parameters, and response curves. — create_pdf

<dl>

<dt>processed_input</dt>
<dd>Processed_input as returned by <code>process_input</code></dd>


<dt>fits_list</dt>
<dd>List of fits as returned by <code>get_fits</code></dd>


<dt>rc_list</dt>
<dd>List of response curves as returned by <code>get_rc_plots</code></dd>


<dt>plot_list</dt>
<dd>List of plots as returned by <code>get_fitted_plots</code></dd>


<dt>...</dt>
<dd>Arguments passed to the <code>pdf</code> function.</dd>

</dl>

create_pdf: Create pdf file with sensorgrams with fitted curves, residuals, table of fit parameters, and response curves.

Description

Usage

Value

Arguments